PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_59B1C9052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 169aa    MW: 18439.5 Da    PI: 10.1694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_59B1C9052.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.52.1e-3122114185
                            EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                            f+k+ tpsdv+k++rlv+pk++ae+h         g++ ++  l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+v
  Traes_4DL_59B1C9052.1  22 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTV 109
                            89****************************999955667899********************************************** PP

                            EEEE- CS
                     B3  81 vFkld 85 
                            +F+++
  Traes_4DL_59B1C9052.1 110 TFSRS 114
                            **943 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-3819132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-3021114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.31122133IPR003340B3 DNA binding domain
SMARTSM010192.8E-2122120IPR003340B3 DNA binding domain
PfamPF023621.7E-2822116IPR003340B3 DNA binding domain
CDDcd100172.61E-2822114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
QGLRRGHGRA QPTPAWAREF PFEKAVTPSD VGKLNRLVVP KQHAEKHFPP TTAAATGSNG  60
KGLLLNFEDG QGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRAGDTVT FSRSAYVMND  120
TDEQLFIDYK QSNKNEEAAD AAKNESGHAA VKLFGVDIGG GGMAGSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-501913011115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612890.0AK361289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645486.11e-67PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
RefseqXP_015622259.11e-67PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ0DXB11e-69Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
SwissprotQ9AWS02e-69Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLW5EHU11e-123W5EHU1_WHEAT; Uncharacterized protein
STRINGMLOC_63261.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-52related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]